FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925130

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925130
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507437
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT24170.47631528642964543No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG21770.429018774744451No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17450.34388505371110106No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC15610.30762439475245207No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC15520.3058507755642572No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14150.27885235014395876No Hit
ATGTGCGAAGACACCATCACCTACGAATGTCCG11970.23589135202990713No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC11630.2291910128745046No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG10590.20869585781092037No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT9090.17913553800767387No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA7700.15174297498999875No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC7530.1483928054122975No Hit
GCGGACGAAGAGGAAGAGGAACTGCTGGCGCTG7210.14208660385427158No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC6530.12868592554346647No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC6290.12395627437494705No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5950.1172559352195445No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5840.11508817843397308No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)