FastQCFastQC Report
Wed 31 May 2023
EGAF00007925131

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925131
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508543
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT21140.4156973943206376No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG19260.3787290356960965No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT15200.2988931122835237No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15100.29692671022902684No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT12920.25405914544099517No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGG12130.23852456921046994No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC11100.2182706280491522No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT10710.2106016600366144No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT8570.16852065607038147No Hit
CGGGCTCGGTGGGTGACGATGGTGGGTGGAAACGCCACGAC8020.15770544477064868No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7870.1547558416889034No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT7280.14315406956737187No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6960.13686158299298193No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC6860.13489518093848504No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT6260.12309676861150384No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT5320.10461258929923331No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)