FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925132

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925132
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508543
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT25250.49651651876045877No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG22080.43418157363290816No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17670.3474632430295963No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC15790.31049488440505524No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC15040.29574686899632874No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC14900.2929939061200331No Hit
ATGTGCGAAGACACCATCACCTACGAATGTCCG12080.23754136818322147No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC11600.22810263832163652No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG10850.21335462291291002No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT8950.17599298387746953No Hit
GCGGACGAAGAGGAAGAGGAACTGCTGGCGCTG7720.15180623860715808No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA7490.1472835138818153No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC6750.1327321386785385No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC6500.12781613354229632No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC6200.12191692737880573No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5980.11759084285891262No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5580.10972523464092515No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5350.10520250991558236No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)