FastQCFastQC Report
Sun 21 May 2023
EGAF00007925133

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925133
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495822
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT19960.40256382330755797No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG18440.37190766041038925No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT14010.2825610803877198No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14000.28235939510550156No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT12630.2547285114416061No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGG12060.24323245035516777No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT10690.21560156669127228No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC10330.20834089653141652No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT8600.17344934270766524No Hit
CGGGCTCGGTGGGTGACGATGGTGGGTGGAAACGCCACGAC7850.15832294654129908No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7830.15791957597686268No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6550.13210385985293108No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6550.13210385985293108No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT6500.13109543344184002No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC6480.1306920628774036No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT5110.10306117921350808No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)