FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925134

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925134
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495822
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT23800.4800109716793527No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22030.4443126767267286No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG19960.40256382330755797No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17640.35577283783293195No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC14840.29930095881183166No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC13720.2767122072033915No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13670.27570378079230046No Hit
ATGTGCGAAGACACCATCACCTACGAATGTCCG11970.24141728281520383No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC11310.22810605418880164No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG9970.20108022637156076No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT9080.1831302362541396No Hit
GCGGACGAAGAGGAAGAGGAACTGCTGGCGCTG7680.15489429674358943No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6940.1399695858594415No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC6330.12766678364413037No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC6310.1272634130796939No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6060.12222128102423854No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5800.11697746368656493No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)