FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925135

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925135
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457599
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC19050.41630335730628787No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT17300.3780602667400934No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC16060.35096230542461854No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12600.2753502520765998No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT11070.2419148643244413No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10490.22924001145107398No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9680.21153892381757824No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9630.21044626408711556No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9440.20629415711135732No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8860.19361930423799004No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA8120.1774479402271421No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7820.1708919818443659No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7590.1658657470842375No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG7210.157561533132721No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6950.151879702534315No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6280.13723806214611484No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5230.11429220780639818No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5030.10992156888454739No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG4750.10380267439395628No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA4670.10205441882521597No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT4600.10052469520256818No Hit

[OK]Adapter Content

Adapter graph