FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457599
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT38030.8310769909899278No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21340.4663471729614794No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC17280.37762320284790835No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC16560.3618889027292455No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16280.3557700082386544No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT14820.32386434410914355No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11220.24519284351582935No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC10300.22508790447531574No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9590.2095721363027454No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8510.18597068612475115No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC7830.17111051379045844No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7160.1564688734022583No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6380.1394233816070402No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5990.13090063570943117No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5470.11953697451261913No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5210.11385514391421311No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5020.10970303693845485No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC4630.1011802910408458No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC4620.10096175909475326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)