FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443534
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC18550.4182317477352356No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT16930.38170692663922046No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC15940.35938620263610005No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11880.26784868803744466No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10470.23605856597239444No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10430.23515671853792494No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10210.2301965576483426No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9180.20697398621075275No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8510.19186804168338842No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8400.18938796123859727No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7630.17202739812505918No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7350.1657144660837726No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7330.16526354236653787No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7100.16007791961833817No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG6210.14001181420139155No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5840.13166972543254857No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5790.1305424161394617No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5530.12468040781540987No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG4960.11182908187421935No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG4530.1021342219536721No Hit

[OK]Adapter Content

Adapter graph