FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925138

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443534
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT36530.8236121695292806No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21930.49443785594790923No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21470.48406661045150995No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16770.3780995369013424No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC15810.35645519847407414No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT15620.35217142316034394No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT13690.30865728444719004No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10770.24282242173091578No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9820.2214035451622649No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9210.20765037178660486No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8150.18375141477316284No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7260.16368530935621622No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC6600.14880482668746928No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6130.13820811933245253No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6100.1375317337566004No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6030.13595350074627877No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5150.11611285718794952No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)