FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457990
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC18670.40765082207035086No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT16630.3631083648114588No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC16630.3631083648114588No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12960.282975610821197No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10970.23952488045590514No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10680.2331928644730234No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9890.21594357955413873No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9690.21157667197973756No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9070.19803925849909387No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8560.18690364418437083No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7810.1705277407803664No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7710.16834428699316578No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7690.16790759623572568No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7440.1624489617677242No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG6510.14214284154675866No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6240.13624751632131704No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5400.11790650450883207No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5060.11048276163235006No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG4860.10611585405794888No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT4610.10065721958994737No Hit

[OK]Adapter Content

Adapter graph