FastQCFastQC Report
Wed 31 May 2023
EGAF00007925140

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925140
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457990
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT38680.8445599248891896No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG23120.5048145156007773No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT17120.37380728836874166No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC16950.3700954169305007No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16620.3628900194327387No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT14460.31572741762920586No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11240.24542020568134676No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9800.2139784711456582No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9580.20917487281381691No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8330.18188170047380947No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7590.16572414244852507No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC6900.150658311316841No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6420.14017773313827814No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6070.13253564488307606No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5720.12489355662787396No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5250.11463132382803119No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5240.11441297844931111No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4700.10262232799842792No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC4590.10022052883250725No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)