FastQCFastQC Report
Wed 31 May 2023
EGAF00007925141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447180
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC18050.40364059215528425No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC16500.36897893465718506No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT16300.3645064627219464No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12630.282436602710318No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT11000.24598595643812335No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10270.22966143387450244No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9880.22094011360078714No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9530.2131132877141196No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8990.20103761348897534No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8510.19030368084440272No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG8330.18627845610268795No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7480.16727045037792387No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7140.15966724808801824No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6990.1563128941365893No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG6670.14915693904020752No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6140.1373048884118252No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5270.11784963549353727No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT4720.1055503376716311No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG4630.10353772530077375No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)