FastQCFastQC Report
Wed 31 May 2023
EGAF00007925142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447180
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT36960.8265128136320944No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG22350.4997987387629143No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20730.46357171608748154No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC16800.37568764256004294No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16220.362717473947851No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16130.3607048615769936No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT14570.3258195804821325No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10140.22675432711659732No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9930.22205823158459678No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9560.21378415850440538No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7930.17733351223221075No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC7070.15810188291068475No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7060.1578782593139228No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6270.14021199516973032No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5680.12701820296077643No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5550.12411109620287133No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG4960.11091730399391743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)