FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490273
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT43950.8964393307402202No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG28310.5774333891525741No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC19430.3963098110644478No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC18780.38305189149718627No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT17790.3628590601562803No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT10490.21396242501626644No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCGCA10350.21110687310947168No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC7970.1625624906939603No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC7760.1582791628337681No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT6870.140126011426287No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTATC6640.13543474757940985No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTAAC6300.12849983580576535No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC5150.10504351657137961No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5050.10300383663795476No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)