FastQCFastQC Report
Wed 31 May 2023
EGAF00007925145

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925145
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477403
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC21030.4405083336300777No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC20500.4294066019694053No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT18800.3937972740012107No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT13140.27523915853063347No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA12620.26434689350506807No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11100.23250796496879994No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT10330.2163790340655589No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAG9130.19124303785271562No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG9000.18851997159632428No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA8850.18537797206971887No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA7420.15542424324941403No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG6520.1365722460897816No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGC6420.13447757973871133No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCAC6320.13238291338764105No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG5880.12316638144293188No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT4960.10389545101308537No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)