FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477403
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT43610.9134839957017447No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG27520.5764521798145382No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22300.4671105962886702No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC19240.4030138059459199No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC18700.3917026076501405No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT16670.34918088072341397No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT10530.2205683667676994No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCGCA9550.2000406365272108No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC7760.16254610884305293No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC6850.14348464504831349No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT6640.13908584571106591No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTATC6470.13552491291424645No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTAAC6230.1304977136716778No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC4940.10347651774287132No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)