FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493133
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC21840.4428825489269629No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC20090.4073951651988409No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT19050.38630552001184265No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT13940.28268235952572635No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA13190.2674734807851026No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11560.23441951765548036No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT10510.21312708741860714No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAG9830.19933770402710832No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA9640.19548478807948363No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG8990.18230375983760974No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA8010.16243082494986139No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG7500.15208878740623727No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCAC6780.1374882638152385No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGC6410.12998521696986412No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG6040.12248217012448975No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT5100.10342037543624133No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)