FastQCFastQC Report
Wed 31 May 2023
EGAF00007925148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493133
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT45420.921049696532173No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG29800.6042994486274494No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC19900.40354224925121623No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC19310.3915779313085922No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT18270.37048828612159396No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT10960.22225241466298137No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCGCA10590.21474936781760703No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC8490.17216450734386057No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC8090.16405310534886125No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTAAC6780.1374882638152385No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTATC6680.13546041331648867No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT6580.13343256281773883No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5700.11558747842874031No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC5200.10544822593499116No Hit
CCGACCAAGTCTCACTTCGCCAACCTGAAGGGT5160.10463708573549124No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)