FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925149

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925149
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469032
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC10330.22024083644612735No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT10230.21810878575449008No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9650.20574289174299407No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC9170.1955090484231353No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8530.18186392399665696No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT7820.1667263640860325No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7200.1535076497978816No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG7160.1526548295212267No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6890.14689829265380613No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6840.1458322673079875No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6800.14497944703133261No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCA6650.14178137099387675No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGT6350.13538521891896502No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT6310.13453239864231012No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6260.1334663732964915No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT6210.13240034795067288No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6170.13154752767401798No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6080.12962868205154446No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5890.1255777857374337No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCA5740.12237970969997782No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCA5560.11854201845503079No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT5340.11385150693342884No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5320.1134250967951014No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5040.10745535485851712No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5030.1072421497893534No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTG4960.10574971430520731No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT4740.10105920278360538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)