FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925150

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925150
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469032
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT16790.35797131112589337No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15790.33665080420952087No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG12570.2679987719388016No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG11480.24475941939995563No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT10550.2249313479677293No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG9630.20531648160466662No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC8960.19103174197069708No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAACAG7850.16736597929352368No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7490.15969059680362963No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG7170.15286803459039042No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA7010.14945675348377083No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGGAC6750.143913421685514No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6360.13559842398812874No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6340.1351720138498013No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6280.13389278343481895No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6180.1317607327431817No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG6130.13069470739736308No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC6100.1300550921898719No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGGAC6050.12898906684405329No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6030.12856265670572584No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGGAC5890.1255777857374337No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5810.1238721451841239No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT5760.12280611983830528No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5540.11811560831670334No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5100.10873458527349945No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5090.10852138020433573No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTAAC5060.10788176499684457No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4940.10532330416687986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)