FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925151

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925151
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456787
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC10220.22373666501016884No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT10020.21935825669294443No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9110.1994364988495732No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC9100.19921757843371202No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8020.1755741735207No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT7470.1635335506483328No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCA7050.15433889318216149No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6860.15017940528079826No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6720.14711451945874116No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG6700.14667667862701872No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGT6420.1405469069829045No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6400.14010906615118207No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT6380.1396712253194596No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6260.13704418032912496No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6200.13573065783395763No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG6150.1346360557546515No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT6040.1322279311801781No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT5820.12741168203123118No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCA5800.12697384119950875No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5780.1265360003677863No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT5230.11449537749541909No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5120.11208725292094564No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5070.11099265084163953No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCA5070.11099265084163953No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5020.10989804876233343No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTG4760.10420611794994165No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)