FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925152

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925152
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456787
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21420.4689275307747375No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT16110.35268078995242863No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15660.34282937123867363No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG11780.25788824988451947No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG11220.24562870659629107No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT10370.22702047124808716No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG8940.19571485177993245No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC8920.19527701094820998No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAACAG7410.1622200281531655No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGGAC7150.15652809734077372No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6850.14996048486493704No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT6750.1477712807063248No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6380.1396712253194596No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC6250.13682525991326372No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6220.13616849866568007No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG6200.13573065783395763No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6070.13288469242776174No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6010.1315711699325944No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGGAC6000.1313522495167332No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG5940.13003872702156585No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5790.12675492078364753No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT5680.12434679620917408No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5560.1217197512188394No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGGAC5400.11821702456505986No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5390.11799810414919863No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5060.11077373042577832No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4820.10551964044510898No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTAAC4780.1046439587816641No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)