FastQCFastQC Report
Wed 31 May 2023
EGAF00007925153

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925153
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490961
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC11980.24401123510828762No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGG11810.24054863828287787No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA11100.2260872044826371No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA10010.20388584836677454No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9690.19736801904835619No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8880.1808697635861097No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG7610.1550021284786368No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6890.14033701251219546No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6620.13483759402477996No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5900.12017247805833865No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5530.1126362379089174No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT5520.11243255574271682No Hit
GGACAGAGAGGCGGTTTTAGCGTTGGACAGTTTGAAGGTTG5500.1120251914103157No Hit
CATGGAGTCCTGCAGCGGCATCGGCGGAGGCGGGAAGCGGG5380.1095810054159088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)