FastQCFastQC Report
Wed 31 May 2023
EGAF00007925154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490961
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT22720.4627658816077041No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGCGT10880.22160619682622448No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG10840.22079146816142217No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG10380.21142208851619582No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG10050.20470057703157685No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9780.19920115854416132No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8940.18209185658331314No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT8870.1806660814199091No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG7650.1558168571434391No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA7070.1440032915038058No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6610.1346339118585794No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG6360.12954185770356505No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCACGT5480.11161782707791454No Hit
GCCAGCGCACAGGGTACGGCGGACGATACCAAC5410.11019205191451054No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5100.10387790476229272No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)