FastQCFastQC Report
Sun 21 May 2023
EGAF00007925157

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925157
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480043
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC11720.24414479536208214No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGG11540.24039513126949044No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA10650.22185512547834257No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9810.20435669304624793No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9150.19060792470674504No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8640.17998387644440186No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG7980.16623510810489894No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6620.1379043127386505No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6490.13519622200511205No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5960.12415554439914758No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT5570.11603127219853221No Hit
GGACAGAGAGGCGGTTTTAGCGTTGGACAGTTTGAAGGTTG5350.1114483494186979No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5060.10540722393618904No Hit
CATGGAGTCCTGCAGCGGCATCGGCGGAGGCGGGAAGCGGG5050.1051989092643784No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)