FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925158

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925158
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480043
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT22260.4637084594505076No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21860.45537587257808154No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGCGT10600.2208135521192893No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG10490.21852209072937218No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG10190.21227265057505268No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG9780.20373174903081598No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9460.19706567953287518No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8810.1835252258651829No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT8060.16790162547938414No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG7890.1643602760586031No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6910.14394543822115935No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6640.13832094208227178No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG6150.12811352316354993No Hit
GCCAGCGCACAGGGTACGGCGGACGATACCAAC5510.11478138416766831No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCACGT4900.10207418918721865No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)