FastQCFastQC Report
Wed 31 May 2023
EGAF00007925161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482648
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9830.2036680976612355No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9690.20076743299464622No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG7670.15891498566242893No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7570.15684308232915084No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6800.1408894266629096No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6430.13322338432978073No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5460.1131259219969833No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC4960.10276640533059289No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)