FastQCFastQC Report
Sun 21 May 2023
EGAF00007925162

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925162
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482648
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20670.4282624189885797No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT16960.35139480532396283No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8290.17176078632875305No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA7580.15705027266247867No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7050.14606918499610483No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6680.1384031426629759No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5540.11478344466360577No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5020.10400954733055974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)