FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925163

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925163
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472249
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9930.21027042937094625No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9080.19227145001895185No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8360.17702525574432132No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6950.1471681252898365No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG6750.14293307132466135No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6550.13869801735948623No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5070.10735861801719009No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)