FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925166

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925166
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445440
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21190.4757094109195403No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18990.42632004310344823No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT14770.33158225574712646No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG11720.263110632183908No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG10520.23617097701149423No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10100.22674209770114942No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA9650.21663972701149425No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9370.21035380747126434No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9080.2038433908045977No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8550.19194504310344826No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG8490.19059806034482757No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG8220.18453663793103448No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT7890.1771282327586207No Hit
ATGTCCAACATGGACATCGATGGTATTAACACC6830.15333153735632185No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6790.1524335488505747No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5900.13245330459770113No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5510.12369791666666666No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5470.12279992816091954No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5200.11673850574712645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)