FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460273
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA13720.2980839632131365No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12240.2659291333621568No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10140.22030403695198286No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG9720.21117901766994807No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG9650.20965818112294227No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9400.20422662202649297No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT8740.18988730601186687No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8420.1829349103684118No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8220.17858966309125238No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8110.17619977708881468No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7900.17163726744779728No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7830.17011643090079148No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACG7390.16055688689104075No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT7030.1527354417921538No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5390.1171044141194465No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA4960.10776213247355375No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4920.10689308301812185No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT4890.10624129592654794No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)