FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925168

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925168
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460273
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19630.42648602025319754No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT15660.34023286180158296No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG13740.2985184879408525No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10440.226821907867722No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG10120.21986951222426693No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA9850.21400342840010167No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9680.21030996821451617No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9420.2046611467542089No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG9150.19879506293004368No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8550.1857593210985654No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG8420.1829349103684118No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT8280.1798932372744002No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7830.17011643090079148No Hit
ATGTCCAACATGGACATCGATGGTATTAACACC7390.16055688689104075No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5850.1270984828569132No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5710.12405680976290158No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5280.11471452811700882No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5280.11471452811700882No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4900.1064585582904059No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTTAC4640.10080973683009867No Hit

[OK]Adapter Content

Adapter graph