FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925169

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448219
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA12670.2826743176884514No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11570.25813274314564977No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10470.23359116860284818No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG9810.21886622387716717No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9270.20681854182888273No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG9210.2054799104901845No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8660.19320912321878367No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT8170.18227696728608112No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8140.181607651616732No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT8020.17893038893933547No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7690.17156791657649495No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7660.17089860090714584No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACG7150.15952023452821054No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT6930.1546119196196502No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5480.12226166226777535No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5350.11936129436726244No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4910.10954466455014178No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT4620.10307461307976681No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)