FastQCFastQC Report
Sun 21 May 2023
EGAF00007925170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448219
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19820.44219455221666193No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19360.43193171195330854No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT14820.33064194065847274No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG12780.2851284751427316No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10550.23537601038777922No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG10200.22756732757870596No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA9680.21596585597665427No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9450.21083443584497757No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9000.20079470080474054No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8670.19343222844190006No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG8360.18651596652529231No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT8310.18540044040971043No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG8280.1847311247403613No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7580.16911375912221482No Hit
ATGTCCAACATGGACATCGATGGTATTAACACC7370.16442854943677085No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5690.1269468719532193No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5650.12605445106075377No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5400.12047682048284432No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5270.1175764525823314No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)