FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925171

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925171
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473848
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT17180.3625635224797826No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG14810.3125474835812328No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA11890.25092434704799854No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTAC11260.2376289443028144No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA10720.22623288480694229No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10120.21357059647819557No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG9600.20259661325994832No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA9110.19225574445813848No Hit
CAGCAGCAGCGCCAGGGCGGTTTCGCCGCCACCGGAAGCCA8820.18613563843257755No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG8790.1855025240161402No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7820.16503182455133292No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG7270.15342472691664838No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAG7190.15173642180614882No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACAC6990.14751565902989988No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6940.14646046833583767No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGAC6450.13611959953402777No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6400.13506440883996557No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCAC5860.12366834934409347No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG5850.12345731120528103No Hit
GCGTTGAATCGGTGCGCGCAGGGTGAACGGGTGGTTTTCTT5630.1188144721514072No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5610.1183923958737823No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC5450.11501578565278317No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC4970.10488595498978576No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG4790.10108726849116172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)