FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473848
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG26290.554819266937921No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20890.4408586719792001No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16890.3564434164542216No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC15690.33111883979672807No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCTGG12140.25620030051830966No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC10770.22728807550100455No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA10460.2207458931978187No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG9350.19732065978963717No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC8970.18930121051476423No Hit
GGTTTCTACGCAGAAGGTTCTCGTGGCGGTTCT8780.18529148587732774No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC8730.1842362951832655No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC8080.1705188161604565No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7840.1654539008289578No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCATC7540.15912275666458442No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGCGT7240.15279161250021106No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG7220.15236953622258614No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC7070.14920396414039944No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7030.14835981158514966No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6360.1342202562847158No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT6350.13400921814590333No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACCCA6240.13168779861896643No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA5970.12598976887103036No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCGGT5960.12577873073221793No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA5910.12472354003815568No Hit
ACCCTGAACGGCGACGACCGTCACAAAATCGTC5900.12451250189934324No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG5640.11902551029021964No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT5520.1164930526244703No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5110.10784048893315999No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTTCT5010.10573010754503555No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG5010.10573010754503555No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4800.10129830662997416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)