FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925173

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925173
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488303
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT16760.3432295111846538No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG15260.31251087951538287No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA12240.25066403442125074No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA12000.2457490533541674No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTAC11770.24103886316487916No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11050.22629391996362913No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG10080.20642920481750063No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG9470.19393696127199708No Hit
CAGCAGCAGCGCCAGGGCGGTTTCGCCGCCACCGGAAGCCA9180.18799802581593805No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA8930.18287825387105955No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8720.17857764543736165No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACAC8050.1648566566250873No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7750.15871293029123312No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAG7490.15338836746855947No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG7170.146835059379115No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6740.138029051633924No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCAC6700.13720988812274346No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6490.13290927968904553No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGAC6440.13188532530006983No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC6050.1238984810660594No Hit
GCGTTGAATCGGTGCGCGCAGGGTGAACGGGTGGTTTTCTT5820.11918829087677119No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5590.11447810068748299No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5470.11202061015394131No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5260.10772000172024336No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTAC5180.10608167469788225No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT5000.10239543889756975No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTT4930.10096190275300378No Hit
CGGGTTGTATGGCTGATCCGGACCGTCGCGTTTGGAGATAC4920.10075711187520864No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)