FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925174

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925174
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488303
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG27860.5705473855372586No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC17170.3516259371742545No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC16460.3370857848507996No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCTGG12490.25578380636612924No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA11930.24431551720960143No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC10670.21851186660741384No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG9790.20049026936144157No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC9580.19618966092774365No Hit
GGTTTCTACGCAGAAGGTTCTCGTGGCGGTTCT9330.19106988898286514No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC9250.18943156196050404No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8860.1814447177264936No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGCGT8460.17325308261468803No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC8310.1701812194477609No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7860.16096562994697966No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC7680.15727939414666714No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCATC7540.15441232185753517No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCGGT7250.14847338640147612No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7160.14663026850131988No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG7000.14335361445659764No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6700.13720988812274346No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA6680.13680030636715318No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6640.13598114285597263No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT6340.12983741652211844No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACCCA6210.12717513511078163No Hit
ACCCTGAACGGCGACGACCGTCACAAAATCGTC5990.12266973579928857No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG5810.11898349999897606No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG5590.11447810068748299No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5530.11324935542071214No Hit
AACGGCACCCGTGCATCTTCCAGCAGCTCTTCC5270.10792479259803853No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC5200.10649125645347253No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTTCT5120.10485292943111142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)