FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477609
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG26150.5475189956638171No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21310.446180871800992No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16940.3546834335198876No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC16240.3400270932917931No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCTGG12020.25167029934528035No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA11110.23261705704875746No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC10460.2190075982655268No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG9480.1984887219461945No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC9270.19409181987776614No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC9140.19136992812112No Hit
GGTTTCTACGCAGAAGGTTCTCGTGGCGGTTCT8580.17964485593864438No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC8400.17587608273713437No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7960.1666635260223321No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGCGT7810.1635228816877404No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCATC7700.16121974250903984No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC7410.15514783012882924No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7220.15116968063834643No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG6880.14405088681327194No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT6750.14132899505662583No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6440.13483833009846966No Hit
ACCCTGAACGGCGACGACCGTCACAAAATCGTC6190.1296039228741502No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCGGT6140.1285570414292863No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA6080.12730078369544962No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA5850.1224851290490757No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG5710.11955386100345682No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACCCA5660.1185069795585929No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5510.11536633522400122No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT5310.11117880944454565No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG5170.10824754139892674No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5050.1057350259312534No Hit
AACGGCACCCGTGCATCTTCCAGCAGCTCTTCC5050.1057350259312534No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTTCT5040.10552564964228062No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC5040.10552564964228062No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)