FastQCFastQC Report
Sun 21 May 2023
EGAF00007925177

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925177
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463561
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT17520.3779437873332744No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT17160.3701778191003989No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG15700.3386825034892927No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT11380.24549088469478664No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT11040.23815635914151537No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG10240.2208986519573476No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7840.16912553040484424No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7370.15898662743414568No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7030.15165210188087436No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6990.15078921652166596No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6830.14733767508483242No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC6280.13547300139571705No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6130.1322371812986856No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5640.12166683564838285No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)