FastQCFastQC Report
Sun 21 May 2023
EGAF00007925178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463561
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT20140.4344627783614239No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG17960.3874355262845667No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC17060.3680206057023779No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC12100.26102282116053765No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC11680.25196252488884957No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC10540.2273702921514105No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8340.1799115973949491No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7950.1714984651426673No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7920.17085130112326102No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC7220.15575080733711422No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7160.15445647929830164No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7080.15273070857988483No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6670.14388613364799888No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG5800.12511837708521642No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5790.1249026557454143No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA5000.10786066990104862No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC4930.10635062052243394No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)