FastQCFastQC Report
Wed 31 May 2023
EGAF00007925179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443886
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT16990.3827559328296004No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT16040.36135404135296No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG15080.33972686680814446No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT11060.24916307340172925No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10430.23497024010669404No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG9700.21852457612990722No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7570.1705392826085977No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7540.16986343340407223No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7210.16242909215429185No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6840.15409361863181087No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6390.14395588056392858No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6230.140351351473126No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC5550.12503210283721497No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5080.11444379863298235No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTG4640.10453134363327521No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)