FastQCFastQC Report
Wed 31 May 2023
EGAF00007925180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443886
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20430.4602533082818562No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT19030.42871367873733346No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16710.37644800692069585No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG16410.369689514875441No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC11710.2638064728331148No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC11550.2602019437423122No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC10010.22550835124333724No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8260.1860838143126839No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7980.17977588840377934No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7770.17504494397210094No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7130.16062682760889058No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6960.1567970154499128No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC6800.15319248635911023No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6170.13899965306407502No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG5760.12976304726889337No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5040.1135426663602817No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC4890.11016342033765426No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA4870.10971285420130394No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)