FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463884
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT17840.3845789033465263No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT16610.3580636538444956No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG15650.3373688249648619No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT12170.26235007027618973No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT11330.24424209500651023No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG9440.2034991506497314No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8210.1769839011477007No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT8170.1761216166110493No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7720.16642091557372102No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7280.15693578567055555No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7270.15672021453639273No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6690.14421708875494735No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC5990.1291271093635478No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5160.11123470522803114No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)