FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925182

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925182
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463884
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT20510.44213639616800754No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG18650.4020401652137172No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16210.34944080847798153No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC12650.2726974847160066No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC12300.2651524950203068No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC9770.21061299807710546No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA9090.19595416095403162No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8530.18388217744091195No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC8430.18172646609928345No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8130.17525933207439792No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7680.1655586310370696No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC7520.16210949289046397No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6780.146157228962413No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG6470.13947452380336464No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5310.1144682722404739No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5130.11058799182554259No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5130.11058799182554259No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA5060.10907899388640264No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)