FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476558
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC13690.2872682863366054No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC10110.2121462655122776No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9640.20228387730349714No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6730.14122100562785642No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6380.1338766739830199No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5760.1208667150693095No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG5410.11352238342447298No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5130.10764691810860377No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA4780.10030258646376727No Hit

[OK]Adapter Content

Adapter graph