FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925184

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925184
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476558
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT25640.5380247524960236No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11230.23564812677575445No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG10570.22179881567406276No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT9130.19158213690673537No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7840.16451302884433794No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7610.15968675376344538No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6040.1267421803851787No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC5450.1143617356124543No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5070.1063878898266318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)