FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462316
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC13640.29503629552081256No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC10330.22344024433504356No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9600.20765017866567456No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7240.15660284307702957No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6420.13886605698266985No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6040.13064657074382025No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA4920.1064207165661582No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG4860.10512290294949775No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA4640.10036425302174269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)