FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925187

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925187
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484581
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACG19910.410870422075979No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT16220.33472216203276645No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG14250.2940684839067153No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT11920.2459857072398629No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC11170.23050841861319366No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG11080.22865114397799335No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT9560.19728383902794375No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC9490.1958392920894546No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9230.19047383203220927No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT8690.1793301842210074No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA8130.16777380871309439No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT7990.16488471483611614No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGT6470.13351740988606653No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCA6350.13104104370579944No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCA5990.12361194516499821No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA5850.12072285128801996No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCA5640.11638921047255257No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5390.11123011426366285No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5360.11061102271859606No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGT5290.10916647578010694No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)