FastQCFastQC Report
Wed 31 May 2023
EGAF00007925188

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925188
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484581
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCCAACATGGACATCGATGGTATTAACACC20310.41912497601020265No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16140.33307125124592174No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT15030.3101648640784513No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG13390.27632119294813456No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA12150.25073207575204143No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA12080.24928752881355232No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT11680.24103297487932876No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG10630.21936477080199182No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG10320.21296749150296856No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA9750.20120475214669992No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC9700.200172932904922No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC9630.19872838596643289No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT8430.1739647241637621No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAACAG7590.15663016090189255No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGGAC6530.13475559297620004No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGGAC6480.1337237737344221No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC6280.12959649676731033No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGGAC6080.1254692198001985No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT6070.12526285595184294No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5950.12278648977157587No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTGCA5800.11969103204624201No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5160.10648374575148428No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAGAG5030.1038010157228616No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTGGC4860.10029283030081658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)